#18 · Systems biology
Population structure, noise and forcing shape whether transmission inferences hold
The common thread is that inferred transmission dynamics depend on model structure and statistical design as much as on data. An agent-based dynamic network model calibrated to NATSAL-3 indicates that concurrency shapes STI transmission within sexual partnership networks. A stochastic SIR model with a CIR-driven transmission rate shows that exogenous noise increases early extinctions and case variability. A simulation study finds that negative binomial GAM time-series regression often fails to recover weather effects on infectious disease counts. What is new is joint attention to how population structure, environmental forcing and noise alter whether conclusions drawn from transmission models and data are supportable.
Published papers
The pitfalls of incidence-based time series regression for inferring the effects of weather on infectious diseases.
Simulations show negative binomial GAM time-series regression often fails to recover weather effects on infectious disease counts.
Preprints
Modelling sexual partnership dynamics and population heterogeneities in agent-based dynamic network models
Agent-based dynamic network model of sexual partnerships, calibrated to NATSAL-3, showing concurrency's role in STI transmission.
The impacts of exogenous noise on stochastic disease dynamics
SDE framework with CIR-driven transmission rate in a stochastic SIR model: exogenous noise increases early extinctions and case variability.
Topic history
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