Top 40
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Structural bio & protein design
AI models design and rank binders, antibodies, and molecular glues
Blinded and benchmark studies now test whether predicted complex scores can reliably rank AI-designed binders and peptides.
Tools & infrastructure
LLMs and curated knowledge graphs are being used to annotate genomic and variant data
LLM agents now annotate ~600,000 GEO transcriptomic samples and extract ~1.3M normalized variants from PubMed text.
Tools & infrastructure
New tools for annotating and benchmarking microbial and phage genomes
Reusable pipelines and public databases now package annotation, quality control, and benchmarking for microbial and phage genomes.
ML / AI methods
Pretrained sequence model embeddings underpin varied function prediction tasks
Recent preprints apply frozen ESM embeddings, sparse autoencoder features, and cross-attention to enzyme, neuropeptide, and receptor prediction tasks.
Structural bio & protein design
Structural graphs and ensembles link protein geometry to function and robustness
Recent preprints apply graph, topology, and simulation metrics to large structure sets, linking geometry to fold switching, binding networks, and mutational…