#3 · Systems biology
Bifurcation structure and heterogeneity determine persistence beyond threshold indices
The dominant thread is that persistence outcomes in these models depend on structural features rather than a single threshold quantity. The black Sigatoka host-pathogen model exhibits backward bifurcation, so persistence can occur when the threshold quantity is below one, and sensitivity and stochastic analyses identify its persistence drivers. A spatial study uses a competitive-balance metric to show that dispersal diversity lowers species vulnerability to local extinction. A published model of microbial generalist and specialist strategies under stochastic feast-famine supply attributes population outcomes to growth-death trade-offs. These items are heterogeneous in system, spanning pathogens, ecological communities, and microbial populations, so the shared element is structural determinants of persistence. What is new is explicit treatment of bifurcation structure and dispersal or nutrient-supply heterogeneity as persistence determinants, rather than threshold indices alone.
Published papers
KmerSignificance score: A discriminative and biologically informed framework for viral k-mer prioritization.
KSS scores viral k-mers by combining an information-theoretic discriminative measure, a GA-optimized MIYATA_EVO substitution matrix, and a UniProt-based…
Preprints
Mathematical genomics of SRY proteins and their associated HMG-Box domains across mammals
Alignment-free compositional analysis of 65 mammalian SRY proteins and 38 HMG boxes across 75 species, with disorder and proximity clustering.
Reference normalizations of Effort-To-Compress across length, alphabet size, and composition
Proposes normalized Effort-To-Compress (nETC, cETC) with certified bounds and matched references across length, alphabet, and composition; tested on Potts…
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