#9 · Systems biology
Stochastic and multiscale models of tumor, glioma and electrotactic cell dynamics
The dominant thread is computational prediction of cell and tissue behavior when several determinants act at once, implemented as multiscale or stochastic simulation. A biophysical study shows that electric fields can override and reverse durotaxis in a cell-type-dependent manner, and releases a free prediction platform. Stochastic multiscale models of glioma invasion under treatment derive random reaction-diffusion-taxis equations and simulate therapy protocols. A cancer progression model couples phenotype-driven traits and resource competition to clonal dynamics, with an efficient simulator and open-source GUI. An HPC finite volume diffusion solver (BioFVM) targets molecular diffusion in agent-based tumor simulations. What is new is explicit treatment of electric and mechanical guidance within these frameworks, alongside efficient, released computational tools. The tumor and glioma work addresses population-scale dynamics rather than directional guidance.
Preprints
A novel scalable high performance diffusion solver for multiscale cell simulations
Presents a scalable HPC diffusion solver built on finite volume methods (BioFVM) for molecular diffusion in multiscale agent-based tumor simulations, reporting…
Randomness-aware multiscale models of glioma invasion and treatment
Stochastic multiscale model of glioma invasion under treatment, deriving random reaction-diffusion-taxis equations and simulating therapy protocols.
Computational insights on the competition between electrotaxis and durotaxis
Biophysical models show electric fields can override and reverse durotaxis, cell-type dependently; a free prediction platform is released.
A new cancer progression model: from synthetic tumors to real data and back
Stochastic tumor evolution model with phenotype-driven traits and resource competition, plus an efficient simulator and open-source GUI for clonal dynamics.
Topic history
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