#24 · ML / AI methods
Latent diffusion models extend to histology staining and drug-response prediction
The common thread is generative latent modeling in which biological structure is imposed as explicit conditioning rather than left to generic embeddings. HistDiT uses a latent diffusion transformer with dual-stream conditioning to virtually stain HER2 IHC from histopathology images, claiming gains over GAN-based approaches. The drug-response model pairs a VAE with a diffusion process to predict condition-aware drug-induced gene expression, with improved generalization to unseen compounds. The retina study is less closely aligned: it couples a gap-junction filter with a DNN as a biological hybrid model, reporting improved adversarial robustness and altered representational manifold geometry along the visual hierarchy. What is new across these items is diffusion-based latent generation with explicit conditioning signals, and, in the retina case, a biologically grounded front-end that constrains the learned representation.
Published papers
Predicting condition-aware drug-induced transcriptional responses via a latent diffusion model.
Latent diffusion model pairing a VAE with a diffusion process predicts condition-aware drug-induced gene expression, improving unseen-compound generalization…
Preprints
HistDiT: A Structure-Aware Latent Conditional Diffusion Model for High-Fidelity Virtual Staining in Histopathology
HistDiT is a latent diffusion transformer with dual-stream conditioning for virtual HER2 IHC staining of histopathology images, claiming gains over GAN and…
Retina gap junctions support the robust perception by warping neural representational geometries along the visual hierarchy
Combines a retina gap-junction filter with a DNN as a biological hybrid model, showing improved adversarial robustness and manifold geometry changes modulated…
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