#28 · Systems biology
Stochastic models link reproductive timing, replication asymmetry, and repeat evolution
The dominant thread is stochastic modeling in which population or lineage-level outcomes are derived from noise or mutational dynamics rather than assumed. A delayed-logistic model under colored environmental noise finds that intermediate reproductive delays are maladaptive, favoring rapid or strongly delayed reproduction. A stochastic generational model links replication-strand and timing mutation asymmetry to proteotoxic load and first-passage proteostasis collapse. Analysis of simple tandem repeat length distributions across T2T human and over 300 mammalian genomes pairs empirical distributions with mutation dynamics that sustain long repeats, with the stable distribution attributed to inherent repeat instability. The items differ in system and evidence type; the shared element is explicit dependence of long-run behavior on fluctuation structure. What is new is noise-dependent selection on reproductive timing and a first-passage framing of proteostasis collapse under replication asymmetry.
Published papers
Inherent instability of simple DNA repeats shapes an evolutionarily stable distribution of repeat lengths.
Analyzes simple tandem repeat length distributions across T2T human and 300+ mammalian genomes, modeling mutation dynamics that sustain long repeats without…
Preprints
Fluctuating Environments Favor Extreme Reproductive Delays and Penalize Intermediate Ones
Delayed-logistic model: colored noise makes intermediate reproductive delays maladaptive, favoring rapid or strongly delayed reproduction.
DNA Replication Asymmetry as a Modifier of Proteostasis Collapse Dynamics
Stochastic generational model linking replication-strand and timing mutation asymmetry to proteotoxic load and first-passage proteostasis collapse under…
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