Top 40
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Single-cell
Paired snRNA and snATAC profiling with benchmarked gene regulatory network inference
Single-cell studies now pair chromatin and transcriptome readouts with standardized benchmarks for evaluating regulatory network inference.
Structural bio & protein design
Structural benchmarks test function transfer, interaction prediction and cryptic pockets
Five September 2026 preprints apply structure-derived predictors to function, interaction, numbering and pocket tasks under calibrated or time-split evaluation.
Genomics
Graph-based, haplotype-aware, and learned methods refine variant calling across…
Long-read and tumor-only sequencing increasingly demand haplotype-aware, pangenome-based, and learned variant callers.
Single-cell
Single-cell models infer cell embeddings, regulatory networks and perturbation responses
Single-cell profiling now pairs large perturbation atlases with interpretable embedding and network inference methods that expose cell-state and gene-level…
ML / AI methods
Specialized LLMs and agents are being applied to protein and single-cell annotation
Recent preprints and one published study apply LLMs with retrieval, fine-tuning, and agent orchestration to genomic and protein annotation tasks.