#25 · Tools & infrastructure
Linking neuronal metabolism, callosal genetics, and imaging pipelines to brain disease
The common thread is computational integration of heterogeneous brain data, from imaging to genome-scale models, to relate structural and molecular variation to disease phenotypes. TRAECR standardizes PET preprocessing for statistical modeling through registration, MRI co-registration, and COMBAT/RAVEL harmonization. A TBI preprint pursues phenotype discovery across heterogeneous multi-site segmentations, motivated by the limits of Glasgow Coma Scale outcomes. On the molecular side, iNeuron-GEM, a curated genome-scale metabolic network for human neurons, is coupled with snRNA-seq from ROSMAP and SEA-AD to resolve neuronal subtype-specific metabolic changes in neurodegenerative and neuropsychiatric disease. A GWAS meta-analysis of 46,685 European individuals, using AI-extracted corpus callosum morphometry, maps the genetic architecture of callosal subregions and their neuropsychiatric associations. Notable is the pairing of harmonized imaging pipelines with cell-type-resolved metabolic and genetic models.
Published papers
The Genetic Architecture of the Human Corpus Callosum and its Subregions.
AI-extracted corpus callosum morphometry and GWAS meta-analysis (N=46,685 European) reveal genetic architecture and neuropsychiatric links.
Preprints
Phenotype discovery of traumatic brain injury segmentations from heterogeneous multi-site data
Traumatic brain injury (TBI) is intrinsically heterogeneous, and typical clinical outcome measures like the Glasgow Coma Scale complicate this diversity.
TRAECR: A Tool for Preprocessing Positron Emission Tomography Imaging for Statistical Modeling
TRAECR tool preprocesses PET brain imaging for statistical modeling via registration, MRI co-registration and COMBAT/RAVEL harmonization.
Neuronal subtype-specific metabolic changes in neurodegenerative and neuropsychiatric diseases predicted via a systems biology-based approach
iNeuron-GEM, a curated genome-scale metabolic network for human neurons, is coupled with snRNA-seq from ROSMAP and SEA-AD to reveal subtype-specific lipid and…
Topic history
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