Top 40
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Tools & infrastructure
Integrated multi-omics resources make heterogeneous public datasets jointly analysable
Standardized reprocessing and cross-layer linkage now let public omics data be queried jointly at cell and variant resolution.
Single-cell
Local geometry couples to dynamical and spatial inference in single-cell data
Geometry-aware models now link local point-cloud structure and spatial context to trajectory, fate, and perturbation inference in single-cell data.
Single-cell
Spatial and single-cell omics tools resolve niches, lineage, and chromatin states
Spatial and single-cell resources and algorithms now benchmark, catalog, and infer cell states across tissues, conditions, and time.
Systems biology
Integrative models of multi-omics and perturbation data for drug response mechanisms
Recent methods integrate multi-study, multi-view and perturbation data to pursue more generalizable response signatures.
Transcriptomics
Structure-aware methods map RNA hairpins, protein binding, and modification motifs
Recent preprints and publications pair sequence-based RNA structure inference with curated binding, G-quadruplex, and modification resources.