Top 40
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Single-cell
Single-cell resources and models map regulators, cell types and differentiation
Single-cell foundation models, auto-updated repositories and large atlases now standardize data and test regulatory predictions.
Single-cell
Joint single-cell RNA and chromatin profiling methods for regulatory network inference
Paired single-cell modalities are now paired with standardized benchmarks and end-to-end pipelines to evaluate regulatory network inference across methods.
ML / AI methods
Learned models address missingness and priors in biomedical prediction tasks
Recent preprints extend learned models to omics synthesis, Raman diagnostics, and population-scale risk from plasma proteomes.
Structural bio & protein design
Coarse-grained models resolve nucleic acid condensate size, folding, and phase separation
Nucleotide-resolved and intermediate-resolution coarse-grained models now address nucleic acid phase separation and folding in heterogeneous systems.
Tools & infrastructure
Restartable and guided pipelines for DNA mapping and ATAC-seq processing
Recent preprints deliver lightweight, restartable and guided pipelines for sequencing data, alongside faster Z-DNA and linkage disequilibrium computation.