Top 40
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Single-cell
Single-cell and transcriptomic tools for cell-cell, signaling and perturbation analysis
Single-cell resolution now supports joint modeling of signaling, cell-cell interaction and perturbation responses across workflows and benchmarks.
ML / AI methods
Mechanistic probing of DNA language models reveals sequence-level biological features
Genomic language models are now probed mechanistically with sparse autoencoders and residual-stream lenses, not only benchmarked on prediction accuracy.
ML / AI methods
Deep models bridge histology, single-cell and chromatin data with gene expression
Recent harmonised benchmarks test whether single-cell and spatial foundation models and histology-to-expression predictors generalise across datasets.
Epigenomics
Chromatin contacts and methylation constrain gene regulation across tissues and disease
Single-cell multiomics and foundation-model analyses now link 3D genome architecture to transcription in human tissues and Alzheimer's disease.
Genomics
Multi-ancestry GWAS methods extend association mapping to admixed, related cohorts
Diverse-population resources and admixture-aware association methods are maturing alongside pangenome-based variant calling and haplotype phasing.