Top 40
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ML / AI methods
Structural priors fused with multimodal inputs predict clinical and regulatory outcomes
Recent preprints and publications pair multi-omics, sequence, and graph structure with specific predictive endpoints, from drug response to CAR T outcomes.
Systems biology
Inferring gene regulatory networks from expression, epigenomic and perturbation data
Enhancer-gene encyclopedias and cross-method benchmarks now test how far inferred regulatory networks can be trusted.
Genomics
Large genome panels resolve lineage history, regulatory networks, and evolutionary rates
Large genome panels and alignment, network, and mediation methods now enable cross-species inference of origin, selection, regulation, and evolutionary tempo.
Genomics
Simulation and sequencing methods probe alternative nucleic acid conformations
Recent preprints and papers pair molecular dynamics, nanopore sequencing and machine learning to resolve non-B DNA and RNA structure.
Tools & infrastructure
Sequencing tools infer molecular features from reads, validated against benchmarks
Recent preprints and papers present Docker-deployable, VCF-based and GUI pipelines for single-cell, somatic and targeted tumor RNA-seq analysis.