Top 40
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Single-cell
Graph and deep generative models resolve cell identity and spatial gene programs
Foundation models, graph learning, and spatially aware factorization now address annotation, deconvolution, and segmentation jointly across modalities.
Single-cell
Benchmarks and atlases test single-cell state inference across omic modalities
Recent work benchmarks scDNA methylation imputation and builds liver and immune single-cell atlases, extending integration to new modalities.
Structural bio & protein design
Learned models couple generation and verification for small molecules and peptides
Learned predictors now drive ultra-large screening, generative design, and out-of-distribution generalization across small molecules and peptides.
Structural bio & protein design
Structure models benchmarked for antibody and TCR antigen recognition
Recent preprints and publications benchmark AlphaFold-family and deep learning models on antibody and TCR-pMHC complexes.
Transcriptomics
New computational methods refine RNA-seq splicing, normalization and long-read analysis
Recent preprints and papers address systematic estimation bias in splicing, normalization, and long-read RNA sequencing analysis.