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Genomics
Allele, copy-number and recombination resolution reshape pathogen genome analysis
Genotype-phenotype errors in AMR prediction and artifacts in viral phylogenies show that analysis choices now limit accuracy in pathogen genomics.
Single-cell
Benchmarks test ML models for single-cell perturbation and cancer prediction
Foundation-model embeddings and diffusion models now face standardized evaluation for perturbation response and cancer tasks, with calibration and leakage…
Tools & infrastructure
Open-source software packages standardize reproducible analysis across omics and imaging…
Recent preprints and publications release open-source Python and R/Shiny tools for reproducible feature extraction, statistical validation, and multi-omic…
Systems biology
Mechanistic models link reproduction numbers, contact structure and heterogeneity
Recent preprints and publications formalize transmission-model inference on contact trees and hierarchical ODE fits to snapshot data, with June 2026 dates.
Tools & infrastructure
New computational workflows for long-read and nanopore RNA data analysis
Recent preprints and published software extend nanopore and long-read RNA analysis across isoforms, structure, tRNAs, and editing.