Top 40
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Single-cell
Linking chromatin and multiomic profiles to spatial context for regulatory inference
Spatial and multiomic frameworks now resolve fate priming, enhancer landscapes, and cell-cell influence from single-cell and spatial transcriptomic data.
Single-cell
Latent models disentangle, integrate and translate single-cell and tissue measurements
Recent preprints and publications apply diffusion, contrastive and VAE-based latent models to single-cell multiomics and histology translation.
Single-cell
Validating computational steps from raw reads to single-cell and transcriptomic measures
Recent benchmarks show ambient RNA removal tools can generate artificial counts, making explicit artifact checks necessary in single-cell pipelines.
Genomics
Benchmarks and learned models expose gaps in metagenomic analysis software
End-to-end pipeline benchmarks now expose performance gaps, while learned models increasingly operate directly on raw reads and unitigs.
ML / AI methods
Graph learning predicts protease cleavage, antibody interfaces and molecular properties
Structure-aware and molecular graph learning now spans protease, antibody, protein-network and drug-binding tasks in recent preprints and papers.