#32 · Structural bio & protein design
Deep learning automates particle picking, fusion, and event detection in microscopy
The dominant thread is learned models that convert raw experimental detections into discrete, interpretable entities, whether fused super-resolution particles, picked cryo-EM particles, or exocytic events. DeepSRFusion applies a self-supervised point-cloud framework to 3D particle fusion in single-molecule localization microscopy, reporting ~1.6 nm resolution. ExoFILT uses a transfer-learning deep classifier to identify exocytic events in single-particle tracking data, cutting manual annotation ten-fold. CryoSIP couples a multi-frequency adaptive U-Net with SAM for cryo-EM particle picking, aiming to reduce false positives. What is new is the shift from manual annotation toward learned pipelines that operate directly on localization or particle data. Only DeepSRFusion and ExoFILT report quantitative gains in the item text, while the CryoSIP summary gives no comparable figure.
Published papers
CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.
CryoSIP is a semantic-instance collaborative framework combining multi-frequency adaptive U-Net with SAM for cryo-EM particle picking, reducing false positives…
Preprints
DeepSRFusion: a point cloud deep learning framework for super-resolution particle fusion
DeepSRFusion: a self-supervised point-cloud deep learning framework for 3D particle fusion in single-molecule localization microscopy, achieving ~1.6 nm…
Density-guided AlphaFold3 uncovers unmodelled conformations in β2-microglobulin
Density-guided AlphaFold3 models alternate backbone conformations of β2-microglobulin directly from crystallographic maps, revealing heterogeneity missed by…
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