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Systems biology
Structure-aware models retain spatial and lineage dependence in single-cell analyses
Structural bio & protein design
Simulations reveal allosteric gating and conformational switching in diverse proteins
Recent atomistic simulations of transporters, enzymes, and NLRP3 and MLKL signalling proteins resolve allosteric pathways at atomic resolution.
ML / AI methods
Learned representations fuse morphology, position and molecular profiles across omics
Foundation-model and graph-based representations now link histology, transcriptomes and spatial context, with benchmarks probing fusion and conformal…
Structural bio & protein design
Structure-aware tools for protein redesign, aggregation, and model validation
Recent preprints and publications pair inverse folding, language models, and deep learning with explicit structural constraints and benchmarking.
ML / AI methods
Protein language models encode taxonomy, nativeness, and memorization in their…
Preprints and a published study now probe what protein and genomic language models learn beyond sequence prediction.