Top 40
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Transcriptomics
Learned models recover cellular and spatial structure from transcriptomic data across…
Recent preprints and papers extend autoencoders, graph networks and foundation-model embeddings to single-cell and spatial analysis.
Single-cell
Regulatory networks and morphology infer single-cell state transitions and fate
Live-cell imaging, morphological features, and regulatory network models now extend state inference beyond transcriptomics alone.
ML / AI methods
LLM agents and structured models are assessed for biomedical reproducibility
Recent benchmarks show full-capability agents reproduce 60.6% of computational biomedical papers, prompting structured retrieval and process-level evaluation.
Systems biology
Genome-scale and hybrid models reconstruct microbial metabolism and community dynamics
May 2026 preprints extend genome-scale metabolic models to enzyme annotation, microbiome dynamics, and membrane transport prediction.
Genomics
Long-read pangenome assemblies resolve LINE-1, NUMT, and germline mutation variation
Pangenome assemblies and sibling-based analyses now enable catalogs of mobile elements, NUMTs, and germline mutation rates at scale.