Top 40
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ML / AI methods
Single-cell and spatial maps resolve immune programs in lupus and breast cancer
Integrated single-cell, spatial, and multi-omic resources now enable cross-tissue and cross-platform comparison of immune and aging states.
Tools & infrastructure
Phylogenomic tools extend mixture models and structure-aware evolution analysis
Recent releases and studies address model fit for heterogeneous phylogenomic data, raw-read viral phylogenies, and horizontal gene transfer networks.
Single-cell
Single-cell foundation models and causal methods reconstruct gene regulatory networks
Benchmarks for generalization of foundation models and perturbation predictors now test whether learned regulatory knowledge transfers across contexts.
Genomics
Genomic comparisons trace duplication, selection, and incompatibility in animals
Expanded genome and transcriptome sampling now resolves how toxin, receptor, and immune gene repertoires diversified across metazoan lineages.
Genomics
Chromosome-scale and haplotype-phased genome assemblies across fungi and plants
Long-read and chromosome-conformation sequencing now yields near chromosome-scale references for diverse non-model plant and fungal species.