Top 40
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Tools & infrastructure
LLM agents orchestrate domain bioinformatics tools with auditable, checkable execution
Recent preprints apply LLM agents to proteomics, transcriptomics, gene-level evidence, and literature-derived databases with traceable outputs.
Tools & infrastructure
Single-cell and spatial resources integrate cell typing, CNV and methylation markers
Single-cell and spatial tools now combine transcriptomic, CNV and methylation data to resolve malignant and cell-type identity across platforms.
ML / AI methods
Benchmark baselines and transfer conditions reshape reported gains in biological ML
Recent preprints and a published model paper test whether reported gains in biological ML hold under stricter baselines and held-out contexts.
ML / AI methods
Biological priors inform models predicting expression from histology and perturbations
Foundation models and graph-based architectures now encode tissue, spatial, and perturbation context to predict transcriptomic and proteomic states.
Genomics
Single-cell QTL mapping resolves cell-type and temporal control of gene regulation
Expanded single-cell, tandem repeat, and circadian eQTL datasets now enable cell-type and time-resolved variant effect mapping at scale.